Email this article Analysis of the env gene variability of the IDU-A HIV-1 variant in the outbreak of the HIV infection epidemic in Perm region of Russia (1996-2011)
- Authors: Lebedev A.V.1,2, Kazennova E.V.1, Zverev S.Y.3, Nistratova Y.I.3, Laga V.Y.1, Tumanov A.S.1, Glushchenko N.V.1, Yarygina E.I.2, Bobkova M.R.1
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Affiliations:
- «Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
- K.I. Skryabin Moscow State Academy of Veterinary Medicine and Biotechnology
- Perm Regional Center for Prevention and Control of AIDS and Infectious Diseases
- Issue: Vol 61, No 5 (2016)
- Pages: 222-229
- Section: ORIGINAL RESEARCH
- Submitted: 20.01.2020
- Published: 28.10.2016
- URL: https://virusjour.crie.ru/jour/article/view/92
- DOI: https://doi.org/10.18821/0507-4088-2016-61-5-222-229
- ID: 92
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Abstract
In the present work, a total of 132 HIV-1 env gene C2-V3-C3 sequences belonging to the IDU-A genetic variant were analyzed. The variants were obtained from the viruses circulating among IDUs and heterosexuals in the Perm region at different periods. It was shown that the rate of the divergence of the IDU-A HIV-1 viruses from a common ancestor increased 4.3 times (p < 0.001) in 2011 as compared with the onset of the epidemics. The rate of the HIV-1 evolution was different in the two risk groups of the infection. The mean genetic distance of HIV-1 variants circulating among heterosexuals was 1.3 times longer (p = 0.008) than that among IDUs. The accumulation rate of the nucleotide (including nonsynonymous) substitutions in the C2-V3-C3 HIV-1 env gene region among individuals infected by heterosexual contacts was 1.7 times higher than that among IDUs. The differences in the positions of the codons subjected to positive selection were demonstrated depending on the infection risk group tested.
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About the authors
A. V. Lebedev
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»; K.I. Skryabin Moscow State Academy of Veterinary Medicine and Biotechnology
Author for correspondence.
Email: lebedevalesha236@gmail.com
Россия
E. V. Kazennova
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
Email: noemail@neicon.ru
Россия
S. Ya. Zverev
Perm Regional Center for Prevention and Control of AIDS and Infectious Diseases
Email: noemail@neicon.ru
Россия
Yu. I. Nistratova
Perm Regional Center for Prevention and Control of AIDS and Infectious Diseases
Email: noemail@neicon.ru
Россия
V. Yu. Laga
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
Email: noemail@neicon.ru
Россия
A. S. Tumanov
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
Email: noemail@neicon.ru
Россия
N. V. Glushchenko
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
Email: noemail@neicon.ru
Россия
E. I. Yarygina
K.I. Skryabin Moscow State Academy of Veterinary Medicine and Biotechnology
Email: noemail@neicon.ru
Россия
M. R. Bobkova
«Federal Research Centre of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
Email: noemail@neicon.ru
Россия
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СМИ зарегистрировано Федеральной службой по надзору в сфере связи, информационных технологий и массовых коммуникаций (Роскомнадзор).