MOLECULAR EPIDEMIOLOGICAL ANALYSIS OF HIV INFECTION IN NORTHERN SEAPORTS OF RUSSIA

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Abstract

The results of the molecular-epidemiological analysis of HIV-1 variants circulating in Arkhangelsk and Murmansk - northern seaports of Russia - were presented. In these seaports the HIV-1 variants belonging to subtype A1 were predominant (93% in Murmansk, 83% in Arkhangelsk). In addition to these variants, viruses of other subtypes such as B, C, D and recombinant forms CRF02_AG and CRF03_AB were identified. The heterogeneity of circulating HIV-1 variants was higher in Arkhangelsk than in Murmansk. According to the results of phylogenetic analysis, subtype A1 sequences formed the common branch with nucleotide sequences of IDU-A strains found in other regions of Russia. HIV-1 variants of subtype B sub-clustered with sequences of East European B-variants. The recombinant strains CRF02_AG formed the common branch with HIV-1 sequences from Central Asia republics of the former USSR. Among 124 therapy-naive patients from Arkhangelsk and Murmansk (n = 124) the transmitted resistance was less than 5%.

About the authors

E. V. Kazennova

D.I. Ivanovsky Institute of Virology «Federal Research Center of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»

Author for correspondence.
Email: kazennova@rambler.ru
Россия

V. Yu. Laga

D.I. Ivanovsky Institute of Virology «Federal Research Center of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»

Email: noemail@neicon.ru
Россия

K. B. Gromov

D.I. Ivanovsky Institute of Virology «Federal Research Center of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»

Email: noemail@neicon.ru
Россия

M. N. Sankov

D.I. Ivanovsky Institute of Virology «Federal Research Center of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»

Email: noemail@neicon.ru
Россия

E. S. Popova

Arkhangelsk Clinical Center for Prevention and Control of AIDS and Infectious Diseases

Email: noemail@neicon.ru
Россия

E. G. Lgumnova

Arkhangelsk Clinical Center for Prevention and Control of AIDS and Infectious Diseases

Email: noemail@neicon.ru
Россия

E. N. Oparina

Arkhangelsk Clinical Center for Prevention and Control of AIDS and Infectious Diseases

Email: noemail@neicon.ru
Россия

T. A. Sorokina

Arkhangelsk Clinical Center for Prevention and Control of AIDS and Infectious Diseases

Email: noemail@neicon.ru
Россия

M. R. Bobkova

D.I. Ivanovsky Institute of Virology «Federal Research Center of Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»

Email: noemail@neicon.ru
Россия

References

  1. Salemi M. Toward a robust monitoring of HIV subtypes distribution worldwide. AIDS. 2011; 25(5): 713-4.
  2. Peeters M., Aghokeng A.F., Delaporte E. Genetic diversity among human immunodeficiency virus-1 non-B subtypes in viral load and drug resistance assays. Clin. Microbiol. Infect. 2010; 16(10): 1525-31.
  3. Easterbrook P.J., Smith M., Mullen J., O’Shea S., Chrystie I., de Ruiter A., et al. Impact of HIV-1 viral subtype on disease progression and response to antiretroviral therapy. J. Int. AIDS Soc. 2010; 13: 4.
  4. Wainberg M.A., Brenner B.G. The Impact of HIV Genetic Polymorphisms and Subtype Differences on the Occurrence of Resistance to Antiretroviral Drugs. Mol. Biol. Int. 2012; 2012: 256982.
  5. Hemelaar J. Implications of HIV diversity for the HIV-1 pandemic. J. Infect. 2013; 66(5): 391-400.
  6. Бобков А.Ф., Казеннова Е.В., Селимова Л.М., Ханина Т.А., Ладная Н.Н., Бобкова М.Р. и др. Молекулярно-вирусологические особенности эпидемии ВИЧ-инфекции в России и других странах СНГ. Вестник Российской Академии медицинских наук. 2003; (12): 83-5.
  7. Гришечкин А.Е., Казеннова Е.В., Суханова А.Л., Белых С.И., Султанов Л.В., Демьяненко Э.Р. и др. Молекулярно-эпидемиологическая характеристика ВИЧ-инфекции на территории Алтайского края. Журнал микробиологии, эпидемиологии и иммунобиологии. 2006; (1): 15-9.
  8. Rumyantseva O.A., Olkhovskiy I.A., Malysheva M.A. Ruzaeva L.A., Vasiliev A.V., Kazennova E.V., et al. Epidemiological networks and drug resistance of HIV type 1 in Krasnoyarsk region, Russia. AIDS Res. Hum. Retroviruses. 2009; 25(9): 931-6
  9. Богачев В.В., Тотменин А.В., Барышев П.Б., Мещерякова Ю.В., Черноусова Н.Я., Гашникова Н.М. Молекулярно-генетическая характеристика вариантов ВИЧ-1 субтипов А и B, выделенных на территории Новосибирской области. Журнал микробиологии, эпидемиологии и иммунобиологии. 2012; (6): 45-52
  10. Kazennova E., Laga V., Lapovok I., Glushchenko N., Neshumaev D., Vasilyev A., et al. HIV-1 Genetic Variants in the Russian Far East. AIDS Res. Hum. Retroviruses. 2014; 30(8): 742-52.
  11. Bobkov A., Kazennova E., Selimova L., Bobkova M., Khanina T., Ladnaya N., et al. A sudden epidemic of HIV type 1 among injecting drug users in the former Soviet Union: Identification of subtype A, subtype B, and novel gagA/envB recombinants. AIDS Res. Hum. Retroviruses. 1998; 14(8): 669-76.
  12. Smolskaya T., Liitsola K., Zetterberg V., Golovanova E., Kevlova N., Konovalova N., et al. HIV epidemiology in the Northwestern Federal District of Russia: dominance of HIV type 1 subtype A. AIDS Res. Hum. Retroviruses. 2006; 22(11): 1074-80.
  13. Казеннова Е.В., Бронникова А.В., Кузин С.Н., Кириллова И.Л., Ершова О.Н., Афанасьева Л.Р. и др. Молекулярно-генетическая характеристика вариантов ВИЧ-1, циркулирующих в г. Череповце Вологодской области: второй случай эпидемической вспышки, вызванной рекомбинантом gagAenvB. Вопросы вирусологии. 2008; 53(5): 23-7
  14. Gashnikova N.M., Bogachev V.V., Baryshev P.B., Totmenin A.V., Gashnikova M.P., Kazachinskaya A.G., et al. A rapid expansion of HIV-1 CRF63_02A1 among newly diagnosed HIV-infected individuals in the Tomsk Region, Russia. AIDS Res. Hum. Retroviruses. 2015; 31(4): 456-60.
  15. Baryshev P.B., Bogachev V.V., Gashnikova N.M. Genetic characterization of an isolate of HIV type 1 AG recombinant form circulating in Siberia, Russia. Arch. Virol. 2012; 157(12): 2335-41.
  16. Лаповок И.А., Лага В.Ю., Казеннова Е.В., Васильев А.В., Дзисюк Н.В., Утегенова А.К. и др. Молекулярно-эпидемиологический анализ ВИЧ-1 в Казахстане в 2009 - 2013 гг. Вопросы вирусологии. 2015; 60(4): 29-37
  17. Chen S., Cai W., He J., Vidal N., Lai C., Guo W., et al. Molecular epidemiology of human immunodeficiency virus type 1 in Guangdong province of Southern China. PLoS One. 2012; 7 (11): e48747
  18. Казеннова Е.В., Нешумаев Д.А., Рукавицин Д.В., Лаповок И.А., Лага В.Ю., Ракчеева О.В. и др. Молекулярно-эпидемиологический анализ эпидемии ВИЧ-инфекции в Благовещенске и Хабаровске (Дальний Восток России). Вопросы вирусологии. 2014; 59(4): 31-6
  19. Bobkov A.F., Lukashov V.V., Goudsmit J., Weber J.N. Silent mutation in the V3 region characteristic of HIV type 1 env subtype B strains from Injecting Drug Users in the Former Soviet Union. AIDS Res. Hum. Retroviruses. 2000; 16(3): 291-4
  20. Лага В.Ю., Казеннова Е.В., Васильев А.В., Лаповок И.А., Исмаилова А., Бейшеева Н. и др. Молекулярно-генетическая характеристика вариантов ВИЧ-1, распространенных на территории Киргизии. Вопросы вирусологии. 2012; 57(5): 26-32
  21. Riva C., Romano L., Saladini F., Lai A., Carr J.K., Francisci D., et al. Identification of a possible ancestor of the subtype A1 HIV Type 1 variant circulating in the former Soviet Union. AIDS Res. Hum. Retroviruses. 2008; 24(10): 1319-25.
  22. Bennett D.E., Camacho R.J., Otelea D., Kuritzkes D.R., Fleury H., Kiuchi M., et al. Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS One. 2009; 4(3): e4724.
  23. Kolomeets A.N., Varghese V., Lemey P., Bobkova M.R., Shafer R.W. A uniquely prevalent nonnucleoside reverse transcriptase inhibitor resistance mutation in Russian subtype A HIV-1 viruses. AIDS. 2014; 28(17): F1-8.
  24. Hofstra L.M., Schmit J.C., Wensing A.M.J. Transmission of HIV-1 drug resistance. In: Handbook of Antimicrobial Resistance. New York: Springer Science - Business Media; 2015: 455-78.
  25. Казеннова Е.В., Лаповок И.А., Лага В.Ю., Васильев А.В., Бобкова М.Р. Естественные полиморфизмы гена pol варианта ВИЧ IDU-A. ВИЧ-инфекция и иммуносупрессии. 2012; 4(4): 44-51
  26. Bobkova M. Current status of HIV-1 diversity and drug resistance monitoring in the former USSR. AIDS Rev. 2015; 15(4): 204-12

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Copyright (c) 2017 Kazennova E.V., Laga V.Y., Gromov K.B., Sankov M.N., Popova E.S., Lgumnova E.G., Oparina E.N., Sorokina T.A., Bobkova M.R.

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