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Detection rates and high concentration of herpesvirus (Orthoherpesviridae) DNA in autopsy materials from patients with COVID-19 fatal outcome

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1. Title Title of document Detection rates and high concentration of herpesvirus (Orthoherpesviridae) DNA in autopsy materials from patients with COVID-19 fatal outcome
2. Creator Author's name, affiliation, country Kirill I. Yurlov; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Sofia A. Yakushina; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation; Department of Health, Moscow Infectious Clinical Hospital No. 1
; Россия
2. Creator Author's name, affiliation, country Natalya E. Fedorova; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Lidiia B. Kisteneva; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation; Department of Health, Moscow Infectious Clinical Hospital No. 1
; Россия
2. Creator Author's name, affiliation, country Elena I. Kelly; Department of Health, Moscow Infectious Clinical Hospital No. 1
; Россия
2. Creator Author's name, affiliation, country Alexander A. Kanibolotsky; Sklifosovsky Research Institute For Emergency Medicine, «Sklifosovsky Institute»; Research Institute for Healthcare and Medical Management of Moscow Healthcare Department
; Россия
2. Creator Author's name, affiliation, country Yevgeniy N. Ivkin; Sklifosovsky Research Institute For Emergency Medicine, «Sklifosovsky Institute»; Research Institute for Healthcare and Medical Management of Moscow Healthcare Department
; Россия
2. Creator Author's name, affiliation, country Natalia A. Antipiat; Department of Health, Moscow Infectious Clinical Hospital No. 1
; Россия
2. Creator Author's name, affiliation, country Igor N. Turin; Department of Health, Moscow Infectious Clinical Hospital No. 1
; Россия
2. Creator Author's name, affiliation, country Victor F. Larichev; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Natalia A. Demidova; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Ekaterina I. Lesnova; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Regina R. Klimova; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Olga V. Masalova; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
2. Creator Author's name, affiliation, country Alla A. Kushch; National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation
; Россия
3. Subject Discipline(s)
3. Subject Keyword(s) SARS-CoV-2; COVID-19; fatal outcome; human herpesviruses; frequency of detection and reactivation of herpesviruses; lung and liver damage
4. Description Abstract

Introduction. SARS-CoV-2 infection causes immune disorders that create conditions for the reactivation of human herpesviruses (HHVs). However, the estimates of the HHVs effect on the course and outcome of COVID-19 are ambiguous.

Аim to study the possible relationship between the HHV reactivation and the adverse outcome of COVID-19.

Materials and methods. Postmortem samples from the brain, liver, spleen, lymph nodes and lungs were obtained from 59 patients treated at the Moscow Infectious Diseases Hospital No.1 in 2021–2023. The group 1 comprised 39 patients with fatal COVID-19; group 2 (comparison group) included 20 patients not infected with SARS-CoV-2 who died from various somatic diseases. HHV DNA and SARS-CoV-2 RNA were determined by PCR.

Results. HHV DNA was found in autopsy samples from all patients. In group 1, EBV was most often detected in lymph nodes (94%), HHV-6 in liver (68%), CMV in lymph nodes (18%), HSV in brain (16%), VZV in lung and spleen (3% each). The detection rates of HHVs in both groups was similar. Important differences were found in viral load. In patients with COVID-19, the number of samples containing more than 1,000 copies of HHV DNA per 100,000 cells was 52.4%, in the comparison group – 16.6% (p < 0.002). An association has been established between the reactivation of HSV and HHV-6 and the severity of lung damage. Reactivation of EBV correlated with increased levels of liver enzymes.

Conclusion. Reactivation of HHVs in patients with fatal COVID-19 was associated with severe lung and liver damages, which indicates a link between HHV reactivation and COVID-19 deaths.

5. Publisher Organizing agency, location Central Research Institute for Epidemiology
6. Contributor Sponsor(s)
7. Date (DD-MM-YYYY) 06.05.2024
8. Type Status & genre Peer-reviewed Article
8. Type Type Research Article
9. Format File format
10. Identifier Uniform Resource Identifier https://virusjour.crie.ru/jour/article/view/16601
10. Identifier Digital Object Identifier (DOI) 10.36233/0507-4088-215
10. Identifier eLIBRARY Document Number (EDN) jxmqzh
11. Source Title; vol., no. (year) Problems of Virology; Vol 69, No 2 (2024)
12. Language English=en ru
13. Relation Supp. Files Fig. 1. The frequency of herpesvirus detection in autopsy materials in patients with COVID-19 fatal outcome (group 1) and without COVID-19 (group 2). Horizontally – the designation of herpesviruses; vertically – the frequency of detection of herpesvirus DNA, in %. COVID-19(+) – 1st group patients with fatal COVID-19; COVID-19(−) – 2nd group patients who died without COVID-19. * – p < 0.05. (278KB)
Fig. 2. Concentrations of herpesvirus DNA in the organs from patients who died with a confirmed diagnosis of COVID-19 (COVID +) or as a result of somatic non-infectious diseases (COVID−). On X-axis – the designations of the organs from which autopsy materials were obtained; on Y-axis – the amount of HHV DNA in copies per 100 thousand cells. The minimum and maximum values of DNA concentration are presented, the lines indicate the medians. * – p < 0.05.. (757KB)
14. Coverage Geo-spatial location, chronological period, research sample (gender, age, etc.)
15. Rights Copyright and permissions Copyright (c) 2024 Yurlov K.I., Yakushina S.A., Fedorova N.E., Kisteneva L.B., Kelly E.I., Kanibolotsky A.A., Ivkin Y.N., Antipiat N.A., Turin I.N., Larichev V.F., Demidova N.A., Lesnova E.I., Klimova R.R., Masalova O.V., Kushch A.A.
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